[pull] dev from nf-core:dev #8
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Remove local module `RRNA_TRANSCRIPTS`
Add missing nf-test to nf-core module: `PICARD_COLLECTRNASEQMETRICS` and update module
Flexible fq names
Make vcf generation optional
Make using COSMIC optional
New module ctat splicing
Co-authored-by: Annick Renevey <[email protected]>
Co-authored-by: Annick Renevey <[email protected]>
Add nf-test to local module `STARFUSION_DETECT`
Refactor references
Add nf-test for local subworkflow `STARFUSION_WORKFLOW`
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